Hi, I am Fabian.

I write scientific code. Mostly in C and C++, mostly efficient. You can find me at different places across the internet. Below is a small list.

Projects

phylonium: ♥ Fast and Accurate Estimation of Evolutionary Distances. A successor to andi.
biozsh: a collection of scripts for ZSH related to bioinformatics. Uses cwl2zshcomp as a starting point for completions.
andi: a tool for the rapid estimation of phylogenies
pfasta: a pedantic parser for FASTA files
libdna: essential functions for DNA manipulation

Past Publications, Talks and Posters

2024:

Beatriz Vieira Mourato, Ivan Tsers, Svenja Denker, Fabian Klötzl, Bernhard Haubold Marker discovery in the large Bioinformatics Advances, Volume 4, Issue 1, 2024, vbae113

2022:

Talk at Future Opportunities for Software in Research: How to make software outlive the research project

2021:

Bernhard Haubold, Fabian Klötzl, Lars Hellberg, Daniel Thompson and Markus Cavalar Fur: Find unique genomic regions for diagnostic PCR Bioinformatics (btab059)
Bernhard Haubold and Fabian Klötzl Fast Phylogeny Reconstruction from Genomes of Closely Related Microbes Becterial Pangenomics, Methods in Molecular Biology 2242

2020:

Fabian Klötzl and Bernhard Haubold Phylonium: Fast Estimation of Evolutionary Distances from Large Samples of Similar Genomes Bioinformatics 36 (7) 2040-2046
Aquavit: Fast Computation of Genome Distances Presentation
Dissertation: Fast Computation of Genome Distances

2019:

GCB2019: Poster on Comparing Distance Matrices

2018:

GCB2018: Talk on Fast and Accurate Distance Computation from Unaligned Genomes
Aquavit: The Craft of Phylogeny Reconstruction

2017:

Steffen Möller, Stuart W. Prescott, Lars Wirzenius, Petter Reinholdtsen, Brad Chapman, Pjotr Prins, Stian Soiland-Reyes, Fabian Klötzl, Andrea Bagnacani, Matúš Kalaš, Andreas Tille, Michael R. Crusoe Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis Data Science and Engineering (2017)

2016:

Bit-twiddling on Nucleotides (preprint)
Linda Odenthal-Hesse, Julien Y. Dutheil, Fabian Klötzl, Bernhard Haubold hotspot: Software to Support Sperm-Typing for Investigating Recombination Hotspots Bioinformatics 32 (16) 2554-2555
Fabian Klötzl, Bernhard Haubold Support Values for Genome Phylogenies Life (6) 11

2015:

My poster (Rapid Phylogeny Reconstruction with Support Values) for the German Conference on Bioinformatics in Dortmund (Abstracts) best poster prize
Bernhard Haubold, Fabian Klötzl, Peter Pfaffelhuber andi: Fast and accurate estimation of evolutionary distances between closely related genomes Bioinformatics 31 (8) 1169-1175
Master's thesis: Efficient Estimation of Evolutionary Distances University of Lübeck

Also checkout my Google Scholar Profile

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